Contributing
Contributions are welcome through GitHub Issues and pull requests. For the repository-level contributor guide, see CONTRIBUTING.md.
Helpful Contributions
- Real-world regression fixtures for sorting, fixing, scaffolding, and graph-aware gap filling.
- Documentation improvements and worked examples for new users.
- Reports from assemblies where MUMmer and minimap2 produce meaningfully different placement evidence.
- Edge cases for GFA/GAF/Hi-C-like support and ambiguous graph paths.
Development Checks
mamba env create -f environment.yml
mamba activate chromosort
pytest
or:
pixi install
pixi run test